Index

_

__init__() (openlifu.io.LIFUHVController.HVController method) (openlifu.io.LIFUTXDevice.TxDevice method) (openlifu.io.LIFUUart.LIFUUart method)

_read_data() (openlifu.io.LIFUUart.LIFUUart method) _tx() (openlifu.io.LIFUUart.LIFUUart method)

A

activate_delay_profile() (openlifu.io.LIFUTXDevice.TxDeviceRegisters method) activate_pulse_profile() (openlifu.io.LIFUTXDevice.TxDeviceRegisters method) active_delay_profile (openlifu.io.LIFUTXDevice.Tx7332Registers attribute) (openlifu.io.LIFUTXDevice.TxDeviceRegisters attribute) active_profile (openlifu.io.LIFUTXDevice.TxDeviceRegisters attribute) active_pulse_profile (openlifu.io.LIFUTXDevice.Tx7332Registers attribute) add_delay_profile() (openlifu.io.LIFUTXDevice.TxDeviceRegisters method) add_demo_response() (openlifu.io.LIFUUart.LIFUUart method) add_pulse_profile() (openlifu.io.LIFUTXDevice.TxDeviceRegisters method) affine_from_vtk_image_data() (in module openlifu.seg.skinseg) allowed_roles (openlifu.plan.protocol.Protocol attribute) amplitude (openlifu.bf.pulse.Pulse attribute) analysis_options (openlifu.plan.protocol.Protocol attribute) analyze() (openlifu.plan.solution.Solution method)

apod_method (openlifu.plan.protocol.Protocol attribute) ApodizationMethod (class in openlifu.bf.apod_methods.apodmethod) apodizations (openlifu.io.LIFUTXDevice.Tx7332DelayProfile attribute) (openlifu.plan.solution.Solution attribute) apply_affine_to_polydata() (in module openlifu.seg.skinseg) apply_all_registers() (openlifu.io.LIFUTXDevice.TxDevice method) apply_exif_orientation_numpy() (in module openlifu.nav.photoscan) approved (openlifu.plan.solution.Solution attribute) array_transform (openlifu.db.session.Session attribute) ArrayTransform (class in openlifu.geo) async_mode() (openlifu.io.LIFUTXDevice.TxDevice method) attenuation (openlifu.seg.material.Material attribute) attrs (openlifu.db.session.Session attribute) (openlifu.db.subject.Subject attribute) (openlifu.xdc.transducer.Transducer attribute)

B

beamwidth_ax_3dB_mm (openlifu.plan.solution_analysis.SolutionAnalysis attribute) beamwidth_ax_6dB_mm (openlifu.plan.solution_analysis.SolutionAnalysis attribute) beamwidth_ele_3dB_mm (openlifu.plan.solution_analysis.SolutionAnalysis attribute) beamwidth_ele_6dB_mm (openlifu.plan.solution_analysis.SolutionAnalysis attribute)

beamwidth_lat_3dB_mm (openlifu.plan.solution_analysis.SolutionAnalysis attribute) beamwidth_lat_6dB_mm (openlifu.plan.solution_analysis.SolutionAnalysis attribute) beamwidth_radius (openlifu.plan.solution_analysis.SolutionAnalysisOptions attribute) bf_clk (openlifu.io.LIFUTXDevice.Tx7332Registers attribute) (openlifu.io.LIFUTXDevice.TxDeviceRegisters attribute)

C

c0 (openlifu.bf.delay_methods.direct.Direct attribute) (openlifu.sim.sim_setup.SimSetup attribute) calc_dist_from_focus() (in module openlifu.plan.solution_analysis) calc_pulse() (openlifu.bf.pulse.Pulse method) calc_pulse_pattern() (in module openlifu.io.LIFUTXDevice) calc_solution() (openlifu.plan.protocol.Protocol method) calc_time() (openlifu.bf.pulse.Pulse method) cartesian_to_spherical() (in module openlifu.geo) cartesian_to_spherical_vectorized() (in module openlifu.geo) center (openlifu.bf.focal_patterns.wheel.Wheel attribute) cfl (openlifu.sim.sim_setup.SimSetup attribute) check_bounds() (openlifu.plan.target_constraints.TargetConstraints method) check_target() (openlifu.plan.protocol.Protocol method) check_usb_status() (openlifu.io.LIFUUart.LIFUUart method) clear_buffer() (openlifu.io.LIFUUart.LIFUUart method)

close() (openlifu.io.LIFUHVController.HVController method) (openlifu.io.LIFUTXDevice.TxDevice method) color (openlifu.geo.Point attribute) compute_foreground_mask() (in module openlifu.seg.skinseg) compute_scaling_factors() (openlifu.plan.solution.Solution method) compute_skin_mesh_from_volume() (in module openlifu.virtual_fit) configured_delay_profiles() (openlifu.io.LIFUTXDevice.TxDeviceRegisters method) configured_pulse_profiles() (openlifu.io.LIFUTXDevice.TxDeviceRegisters method) connect() (openlifu.io.LIFUSignal.LIFUSignal method) (openlifu.io.LIFUUart.LIFUUart method) convert_between_ras_and_lps() (in module openlifu.nav.photoscan) convert_numpy_to_vtkimage() (in module openlifu.nav.photoscan) convert_transform() (openlifu.xdc.transducer.Transducer method) create_closed_surface_from_labelmap() (in module openlifu.seg.skinseg) create_standoff_transform() (in module openlifu.geo) cycles (openlifu.io.LIFUTXDevice.Tx7332PulseProfile attribute)

D

Database (class in openlifu.db.database) date_created (openlifu.db.session.Session attribute) (openlifu.plan.solution.Solution attribute) date_modified (openlifu.db.session.Session attribute) delay_method (openlifu.plan.protocol.Protocol attribute) DelayMethod (class in openlifu.bf.delay_methods.delaymethod) delays (openlifu.io.LIFUTXDevice.Tx7332DelayProfile attribute) (openlifu.plan.solution.Solution attribute) demo_tx7332() (openlifu.io.LIFUTXDevice.TxDevice method) density (openlifu.seg.material.Material attribute) description (openlifu.db.user.User attribute) (openlifu.plan.protocol.Protocol attribute) (openlifu.plan.solution.Solution attribute)

dim (openlifu.plan.target_constraints.TargetConstraints attribute) dims (openlifu.geo.Point attribute) Direct (class in openlifu.bf.delay_methods.direct) disconnect() (openlifu.io.LIFUSignal.LIFUSignal method) (openlifu.io.LIFUUart.LIFUUart method) distance_units (openlifu.bf.focal_patterns.wheel.Wheel attribute) (openlifu.plan.solution_analysis.SolutionAnalysisOptions attribute) dt (openlifu.sim.sim_setup.SimSetup attribute) duration (openlifu.bf.pulse.Pulse attribute) duty_cycle (openlifu.io.LIFUTXDevice.Tx7332PulseProfile attribute) duty_cycle_pulse_train_pct (openlifu.plan.solution_analysis.SolutionAnalysis attribute) duty_cycle_sequence_pct (openlifu.plan.solution_analysis.SolutionAnalysis attribute)

E

echo() (openlifu.io.LIFUHVController.HVController method) (openlifu.io.LIFUTXDevice.TxDevice method) Element (class in openlifu.xdc.element) elements (openlifu.xdc.transducer.Transducer attribute)

emit() (openlifu.io.LIFUSignal.LIFUSignal method) enter_dfu() (openlifu.io.LIFUHVController.HVController method) (openlifu.io.LIFUTXDevice.TxDevice method) enum_tx7332_devices() (openlifu.io.LIFUTXDevice.TxDevice method) error_value (openlifu.plan.param_constraint.ParameterConstraint attribute)

F

find_centroid() (in module openlifu.plan.solution_analysis) fix_pulse_mismatch() (openlifu.plan.protocol.Protocol method) focal_centroid_ax_mm (openlifu.plan.solution_analysis.SolutionAnalysis attribute) focal_centroid_ele_mm (openlifu.plan.solution_analysis.SolutionAnalysis attribute) focal_centroid_lat_mm (openlifu.plan.solution_analysis.SolutionAnalysis attribute) focal_pattern (openlifu.plan.protocol.Protocol attribute) FocalPattern (class in openlifu.bf.focal_patterns.focal_pattern) foci (openlifu.plan.solution.Solution attribute) frequency (openlifu.bf.pulse.Pulse attribute) (openlifu.io.LIFUTXDevice.Tx7332PulseProfile attribute) (openlifu.xdc.transducer.Transducer attribute) from_dict() (openlifu.bf.focal_patterns.focal_pattern.FocalPattern static method) (openlifu.db.session.Session static method) (openlifu.geo.Point static method) (openlifu.nav.photoscan.Photoscan static method) (openlifu.plan.solution.Solution static method) (openlifu.plan.solution_analysis.SolutionAnalysis class method) (openlifu.plan.solution_analysis.SolutionAnalysisOptions class method) (openlifu.sim.sim_setup.SimSetup static method) (openlifu.virtual_fit.VirtualFitOptions static method) (openlifu.xdc.transducerarray.TransducerArray static method)

from_file() (openlifu.db.session.Session static method) (openlifu.db.subject.Subject static method) (openlifu.nav.photoscan.Photoscan static method) (openlifu.plan.run.Run static method) from_files() (openlifu.plan.solution.Solution static method) from_json() (openlifu.db.session.Session static method) (openlifu.db.user.User static method) (openlifu.geo.Point static method) (openlifu.nav.photoscan.Photoscan static method) (openlifu.plan.protocol.Protocol static method) (openlifu.plan.run.Run static method) (openlifu.plan.solution.Solution static method) (openlifu.plan.solution_analysis.SolutionAnalysis static method) (openlifu.xdc.transducer.Transducer static method)

G

gen_matrix_array() (openlifu.xdc.transducer.Transducer static method) get_ambient_temperature() (openlifu.io.LIFUTXDevice.TxDevice method) get_angle_from_gap() (in module openlifu.xdc.transducerarray) get_beam_bounds() (in module openlifu.plan.solution_analysis) get_beamwidth() (in module openlifu.plan.solution_analysis) get_default_path() (openlifu.db.database.Database static method) get_default_user_dir() (openlifu.db.database.Database static method) get_delay_control_registers() (openlifu.io.LIFUTXDevice.TxDeviceRegisters method) get_delay_data_registers() (openlifu.io.LIFUTXDevice.TxDeviceRegisters method) get_delay_location() (in module openlifu.io.LIFUTXDevice) get_delay_profile() (openlifu.io.LIFUTXDevice.TxDeviceRegisters method) get_effective_origin() (openlifu.xdc.transducer.Transducer method) get_fan_speed() (openlifu.io.LIFUHVController.HVController method) get_focus_matrix() (in module openlifu.plan.solution_analysis) get_gridded_transformed_coords() (in module openlifu.plan.solution_analysis) get_hardware_id() (openlifu.io.LIFUHVController.HVController method) (openlifu.io.LIFUTXDevice.TxDevice method) get_ita() (openlifu.plan.solution.Solution method) get_karray() (in module openlifu.sim.kwave_if) get_kgrid() (in module openlifu.sim.kwave_if) get_mask() (in module openlifu.plan.solution_analysis) get_medium() (in module openlifu.sim.kwave_if) get_meshroom_config_info() (in module openlifu.nav.photoscan) get_meshroom_pipeline_names() (in module openlifu.nav.photoscan) get_modnet_path() (in module openlifu.nav.photoscan) get_offset_grid() (in module openlifu.plan.solution_analysis) get_pattern_location() (in module openlifu.io.LIFUTXDevice) get_photocollection_absolute_filepaths() (openlifu.db.database.Database method) get_photocollection_reference_numbers() (openlifu.db.database.Database method) get_photocollections_filename() (openlifu.db.database.Database method) get_photoscan_absolute_filepaths_info() (openlifu.db.database.Database method) get_photoscan_ids() (openlifu.db.database.Database method) get_photoscans_filename() (openlifu.db.database.Database method)

get_polydata() (openlifu.xdc.transducer.Transducer method) get_pulse_control_registers() (openlifu.io.LIFUTXDevice.TxDeviceRegisters method) get_pulse_data_registers() (openlifu.io.LIFUTXDevice.TxDeviceRegisters method) get_pulse_profile() (openlifu.io.LIFUTXDevice.TxDeviceRegisters method) get_pulse_train_duration() (openlifu.bf.sequence.Sequence method) get_pulsetrain_dutycycle() (openlifu.plan.solution.Solution method) get_register_value() (in module openlifu.io.LIFUTXDevice) get_registers() (openlifu.io.LIFUTXDevice.TxDeviceRegisters method) get_rgb_led() (openlifu.io.LIFUHVController.HVController method) get_roc_from_angle() (in module openlifu.xdc.transducerarray) get_sensor() (in module openlifu.sim.kwave_if) get_sequence_duration() (openlifu.bf.sequence.Sequence method) get_sequence_dutycycle() (openlifu.plan.solution.Solution method) get_solution_filepath() (openlifu.db.database.Database method) get_solution_ids() (openlifu.db.database.Database method) get_solutions_filename() (openlifu.db.database.Database method) get_source() (in module openlifu.sim.kwave_if) get_standoff_transform_in_units() (openlifu.xdc.transducer.Transducer method) get_targets() (openlifu.bf.focal_patterns.focal_pattern.FocalPattern method) (openlifu.bf.focal_patterns.single.SinglePoint method) (openlifu.bf.focal_patterns.wheel.Wheel method) get_temperature() (openlifu.io.LIFUTXDevice.TxDevice method) get_temperature1() (openlifu.io.LIFUHVController.HVController method) get_temperature2() (openlifu.io.LIFUHVController.HVController method) get_transducer_absolute_filepaths() (openlifu.db.database.Database method) get_trigger() (openlifu.io.LIFUTXDevice.TxDevice method) get_trigger_json() (openlifu.io.LIFUTXDevice.TxDevice method) get_version() (openlifu.io.LIFUHVController.HVController method) (openlifu.io.LIFUTXDevice.TxDevice method) get_voltage() (openlifu.io.LIFUHVController.HVController method) global_isppa_Wcm2 (openlifu.plan.solution_analysis.SolutionAnalysis attribute) global_ispta_mWcm2 (openlifu.plan.solution_analysis.SolutionAnalysis attribute) global_pnp_MPa (openlifu.plan.solution_analysis.SolutionAnalysis attribute)

H

HVController (class in openlifu.io.LIFUHVController)

hvcontroller (openlifu.io.LIFUInterface attribute)

I

id (openlifu.db.session.Session attribute) (openlifu.db.subject.Subject attribute) (openlifu.db.user.User attribute) (openlifu.geo.Point attribute) (openlifu.nav.photoscan.Photoscan attribute) (openlifu.plan.protocol.Protocol attribute) (openlifu.plan.run.Run attribute) (openlifu.plan.solution.Solution attribute) (openlifu.xdc.transducer.Transducer attribute) impulse_dt (openlifu.xdc.element.Element attribute) (openlifu.xdc.transducer.Transducer attribute)

impulse_response (openlifu.xdc.element.Element attribute) (openlifu.xdc.transducer.Transducer attribute) in_bounds (openlifu.virtual_fit.VirtualFitDebugInfo attribute) index (openlifu.xdc.element.Element attribute) initialize_empty_database() (openlifu.db.database.Database static method) interp_transformed_axis() (in module openlifu.plan.solution_analysis) invert (openlifu.io.LIFUTXDevice.Tx7332PulseProfile attribute) is_connected() (openlifu.io.LIFUTXDevice.TxDevice method) (openlifu.io.LIFUUart.LIFUUart method)

L

LIFUSignal (class in openlifu.io.LIFUSignal) LIFUUart (class in openlifu.io.LIFUUart) list_vcp_with_vid_pid() (openlifu.io.LIFUUart.LIFUUart method) load_data_from_filepaths() (in module openlifu.nav.photoscan) load_data_from_photoscan() (in module openlifu.nav.photoscan) load_model() (in module openlifu.nav.photoscan)

load_photoscan() (openlifu.db.database.Database method) load_solution() (openlifu.db.database.Database method) load_texture() (in module openlifu.nav.photoscan) load_transducer() (openlifu.db.database.Database method) load_transducer_from_file() (in module openlifu.xdc.util) load_volume() (openlifu.db.database.Database method)

M

mainlobe_aspect_ratio (openlifu.plan.solution_analysis.SolutionAnalysisOptions attribute) mainlobe_isppa_Wcm2 (openlifu.plan.solution_analysis.SolutionAnalysis attribute) mainlobe_ispta_mWcm2 (openlifu.plan.solution_analysis.SolutionAnalysis attribute) mainlobe_pnp_MPa (openlifu.plan.solution_analysis.SolutionAnalysis attribute) mainlobe_radius (openlifu.plan.solution_analysis.SolutionAnalysisOptions attribute) make_masks() (in module openlifu.nav.photoscan) markers (openlifu.db.session.Session attribute) Material (class in openlifu.seg.material) materials (openlifu.seg.seg_method.SegmentationMethod attribute) matrix (openlifu.geo.ArrayTransform attribute) matrix2xyz() (in module openlifu.xdc.element) max (openlifu.plan.target_constraints.TargetConstraints attribute) max_angle (openlifu.bf.apod_methods.maxangle.MaxAngle attribute) MaxAngle (class in openlifu.bf.apod_methods.maxangle) merge_textures() (in module openlifu.nav.photoscan) MI (openlifu.plan.solution_analysis.SolutionAnalysis attribute) min (openlifu.plan.target_constraints.TargetConstraints attribute) model_filename (openlifu.nav.photoscan.Photoscan attribute) module openlifu openlifu.bf openlifu.bf.apod_methods openlifu.bf.apod_methods.apodmethod openlifu.bf.apod_methods.maxangle openlifu.bf.apod_methods.piecewiselinear openlifu.bf.apod_methods.uniform openlifu.bf.delay_methods openlifu.bf.delay_methods.delaymethod openlifu.bf.delay_methods.direct openlifu.bf.focal_patterns openlifu.bf.focal_patterns.focal_pattern openlifu.bf.focal_patterns.single openlifu.bf.focal_patterns.wheel openlifu.bf.pulse openlifu.bf.sequence openlifu.db openlifu.db.database openlifu.db.session openlifu.db.subject openlifu.db.user openlifu.geo openlifu.io openlifu.io.LIFUConfig openlifu.io.LIFUHVController openlifu.io.LIFUInterface openlifu.io.LIFUSignal openlifu.io.LIFUTXDevice openlifu.io.LIFUUart openlifu.nav openlifu.nav.meshroom_pipelines openlifu.nav.modnet_checkpoints openlifu.nav.photoscan openlifu.plan openlifu.plan.param_constraint openlifu.plan.protocol openlifu.plan.run openlifu.plan.solution openlifu.plan.solution_analysis openlifu.plan.target_constraints openlifu.seg openlifu.seg.material openlifu.seg.seg_method openlifu.seg.seg_methods openlifu.seg.seg_methods.uniform openlifu.seg.skinseg openlifu.sim openlifu.sim.kwave_if openlifu.sim.sim_setup openlifu.virtual_fit openlifu.xdc openlifu.xdc.element openlifu.xdc.transducer openlifu.xdc.transducerarray openlifu.xdc.util

module_invert (openlifu.io.LIFUTXDevice.TxDeviceRegisters attribute) (openlifu.xdc.transducer.Transducer attribute) monitor_usb_status() (openlifu.io.LIFUUart.LIFUUart method) mtl_filename (openlifu.nav.photoscan.Photoscan attribute)

N

name (openlifu.db.session.Session attribute) (openlifu.db.subject.Subject attribute) (openlifu.db.user.User attribute) (openlifu.geo.Point attribute) (openlifu.nav.photoscan.Photoscan attribute) (openlifu.plan.protocol.Protocol attribute) (openlifu.plan.run.Run attribute) (openlifu.plan.solution.Solution attribute) (openlifu.plan.target_constraints.TargetConstraints attribute) (openlifu.seg.material.Material attribute) (openlifu.xdc.transducer.Transducer attribute)

note (openlifu.plan.run.Run attribute) num_foci() (openlifu.bf.focal_patterns.focal_pattern.FocalPattern method) (openlifu.bf.focal_patterns.single.SinglePoint method) (openlifu.bf.focal_patterns.wheel.Wheel method) (openlifu.plan.solution.Solution method) num_spokes (openlifu.bf.focal_patterns.wheel.Wheel attribute) num_transmitters (openlifu.io.LIFUTXDevice.TxDeviceRegisters attribute)

O

OnConflictOpts (class in openlifu.db.database) OnPulseMismatchAction (class in openlifu.plan.protocol) openlifu module openlifu.bf module openlifu.bf.apod_methods module openlifu.bf.apod_methods.apodmethod module openlifu.bf.apod_methods.maxangle module openlifu.bf.apod_methods.piecewiselinear module openlifu.bf.apod_methods.uniform module openlifu.bf.delay_methods module openlifu.bf.delay_methods.delaymethod module openlifu.bf.delay_methods.direct module openlifu.bf.focal_patterns module openlifu.bf.focal_patterns.focal_pattern module openlifu.bf.focal_patterns.single module openlifu.bf.focal_patterns.wheel module openlifu.bf.pulse module openlifu.bf.sequence module openlifu.db module openlifu.db.database module openlifu.db.session module openlifu.db.subject module openlifu.db.user module openlifu.geo module openlifu.io module openlifu.io.LIFUConfig module openlifu.io.LIFUHVController module openlifu.io.LIFUInterface module openlifu.io.LIFUSignal module openlifu.io.LIFUTXDevice module

openlifu.io.LIFUUart module openlifu.nav module openlifu.nav.meshroom_pipelines module openlifu.nav.modnet_checkpoints module openlifu.nav.photoscan module openlifu.plan module openlifu.plan.param_constraint module openlifu.plan.protocol module openlifu.plan.run module openlifu.plan.solution module openlifu.plan.solution_analysis module openlifu.plan.target_constraints module openlifu.seg module openlifu.seg.material module openlifu.seg.seg_method module openlifu.seg.seg_methods module openlifu.seg.seg_methods.uniform module openlifu.seg.skinseg module openlifu.sim module openlifu.sim.kwave_if module openlifu.sim.sim_setup module openlifu.virtual_fit module openlifu.xdc module openlifu.xdc.element module openlifu.xdc.transducer module openlifu.xdc.transducerarray module openlifu.xdc.util module operator (openlifu.plan.param_constraint.ParameterConstraint attribute) options (openlifu.sim.sim_setup.SimSetup attribute) orientation (openlifu.xdc.element.Element attribute)

P

p0_MPa (openlifu.plan.solution_analysis.SolutionAnalysis attribute) pack_registers() (in module openlifu.io.LIFUTXDevice) param_constraints (openlifu.plan.protocol.Protocol attribute) (openlifu.plan.solution_analysis.SolutionAnalysis attribute) (openlifu.plan.solution_analysis.SolutionAnalysisOptions attribute) ParameterConstraint (class in openlifu.plan.param_constraint) password_hash (openlifu.db.user.User attribute) Photoscan (class in openlifu.nav.photoscan) photoscan_approved (openlifu.nav.photoscan.Photoscan attribute) photoscan_id (openlifu.db.session.TransducerTrackingResult attribute) photoscan_to_volume_tracking_approved (openlifu.db.session.TransducerTrackingResult attribute) photoscan_to_volume_transform (openlifu.db.session.TransducerTrackingResult attribute) PiecewiseLinear (class in openlifu.bf.apod_methods.piecewiselinear) pin (openlifu.xdc.element.Element attribute) ping() (openlifu.io.LIFUHVController.HVController method) (openlifu.io.LIFUTXDevice.TxDevice method) pitch_range (openlifu.virtual_fit.VirtualFitOptions attribute) pitch_step (openlifu.virtual_fit.VirtualFitOptions attribute) plane_normals (openlifu.virtual_fit.VirtualFitDebugInfo attribute) planefit_dpitch_extent (openlifu.virtual_fit.VirtualFitOptions attribute) planefit_dpitch_step (openlifu.virtual_fit.VirtualFitOptions attribute) planefit_dyaw_extent (openlifu.virtual_fit.VirtualFitOptions attribute)

planefit_dyaw_step (openlifu.virtual_fit.VirtualFitOptions attribute) Point (class in openlifu.geo) position (openlifu.geo.Point attribute) (openlifu.xdc.element.Element attribute) power_W (openlifu.plan.solution_analysis.SolutionAnalysis attribute) preprocess_image_modnet() (in module openlifu.nav.photoscan) preprocess_image_paths() (in module openlifu.nav.photoscan) print (openlifu.io.LIFUTXDevice.TxDevice property) print() (openlifu.io.LIFUUart.LIFUUart method) print_regs() (in module openlifu.io.LIFUTXDevice) profile (openlifu.io.LIFUTXDevice.Tx7332DelayProfile attribute) (openlifu.io.LIFUTXDevice.Tx7332PulseProfile attribute) Protocol (class in openlifu.plan.protocol) protocol_id (openlifu.db.session.Session attribute) (openlifu.plan.solution.Solution attribute) Pulse (class in openlifu.bf.pulse) pulse (openlifu.plan.protocol.Protocol attribute) (openlifu.plan.solution.Solution attribute) pulse_count (openlifu.bf.sequence.Sequence attribute) pulse_interval (openlifu.bf.sequence.Sequence attribute) pulse_train_count (openlifu.bf.sequence.Sequence attribute) pulse_train_interval (openlifu.bf.sequence.Sequence attribute)

R

radius (openlifu.geo.Point attribute) read_as_vtkimagedata() (in module openlifu.nav.photoscan) read_as_vtkpolydata() (in module openlifu.nav.photoscan) read_packet() (openlifu.io.LIFUUart.LIFUUart method) read_register() (openlifu.io.LIFUTXDevice.TxDevice method) recompute_delay_profiles() (openlifu.io.LIFUTXDevice.TxDeviceRegisters method) recompute_pulse_profiles() (openlifu.io.LIFUTXDevice.TxDeviceRegisters method) ref_density (openlifu.plan.solution_analysis.SolutionAnalysisOptions attribute) ref_material (openlifu.seg.seg_method.SegmentationMethod attribute) ref_sound_speed (openlifu.plan.solution_analysis.SolutionAnalysisOptions attribute)

registration_surface_filename (openlifu.xdc.transducer.Transducer attribute) remove_delay_profile() (openlifu.io.LIFUTXDevice.TxDeviceRegisters method) remove_pulse_profile() (openlifu.io.LIFUTXDevice.TxDeviceRegisters method) roles (openlifu.db.user.User attribute) rolloff_angle (openlifu.bf.apod_methods.piecewiselinear.PiecewiseLinear attribute) Run (class in openlifu.plan.run) run_coroutine() (openlifu.io.LIFUUart.LIFUUart method) run_reconstruction() (in module openlifu.nav.photoscan) run_simulation() (in module openlifu.sim.kwave_if) run_virtual_fit() (in module openlifu.virtual_fit)

S

scale() (openlifu.plan.solution.Solution method) search_points (openlifu.virtual_fit.VirtualFitDebugInfo attribute) seg_method (openlifu.plan.protocol.Protocol attribute) SegmentationMethod (class in openlifu.seg.seg_method) send_packet() (openlifu.io.LIFUUart.LIFUUart method) sensitivity (openlifu.xdc.element.Element attribute) (openlifu.xdc.transducer.Transducer attribute) Sequence (class in openlifu.bf.sequence) sequence (openlifu.plan.protocol.Protocol attribute) (openlifu.plan.solution.Solution attribute) sequence_duration_s (openlifu.plan.solution_analysis.SolutionAnalysis attribute) Session (class in openlifu.db.session) session_id (openlifu.plan.run.Run attribute) set_dacs() (openlifu.io.LIFUHVController.HVController method) set_fan_speed() (openlifu.io.LIFUHVController.HVController method) set_module_invert() (openlifu.io.LIFUTXDevice.TxDevice method) set_register_value() (in module openlifu.io.LIFUTXDevice) set_rgb_led() (openlifu.io.LIFUHVController.HVController method) set_solution() (openlifu.io.LIFUTXDevice.TxDevice method) set_trigger() (openlifu.io.LIFUTXDevice.TxDevice method) set_trigger_json() (openlifu.io.LIFUTXDevice.TxDevice method) set_voltage() (openlifu.io.LIFUHVController.HVController method) setup_sim_scene() (openlifu.sim.sim_setup.SimSetup method) sidelobe_isppa_Wcm2 (openlifu.plan.solution_analysis.SolutionAnalysis attribute) sidelobe_pnp_MPa (openlifu.plan.solution_analysis.SolutionAnalysis attribute) sidelobe_radius (openlifu.plan.solution_analysis.SolutionAnalysisOptions attribute) sidelobe_to_mainlobe_intensity_ratio (openlifu.plan.solution_analysis.SolutionAnalysis attribute) sidelobe_to_mainlobe_pressure_ratio (openlifu.plan.solution_analysis.SolutionAnalysis attribute) sidelobe_zmin (openlifu.plan.solution_analysis.SolutionAnalysisOptions attribute) signal_connect (openlifu.io.LIFUInterface attribute) signal_data_received (openlifu.io.LIFUInterface attribute) signal_disconnect (openlifu.io.LIFUInterface attribute) sim_setup (openlifu.plan.protocol.Protocol attribute) SimSetup (class in openlifu.sim.sim_setup) simulation_result (openlifu.plan.solution.Solution attribute)

SinglePoint (class in openlifu.bf.focal_patterns.single) size (openlifu.xdc.element.Element attribute) skin_mesh (openlifu.virtual_fit.VirtualFitDebugInfo attribute) soft_reset() (openlifu.io.LIFUHVController.HVController method) (openlifu.io.LIFUTXDevice.TxDevice method) Solution (class in openlifu.plan.solution) solution_id (openlifu.plan.run.Run attribute) SolutionAnalysis (class in openlifu.plan.solution_analysis) SolutionAnalysisOptions (class in openlifu.plan.solution_analysis) sort_by_index() (openlifu.xdc.transducer.Transducer method) sort_by_pin() (openlifu.xdc.transducer.Transducer method) sound_speed (openlifu.seg.material.Material attribute) spacing (openlifu.sim.sim_setup.SimSetup attribute) specific_heat (openlifu.seg.material.Material attribute) sphere_from_interpolator() (in module openlifu.virtual_fit) spherical_coordinate_basis() (in module openlifu.geo) spherical_interpolator_from_mesh() (in module openlifu.seg.skinseg) spherical_to_cartesian() (in module openlifu.geo) spherical_to_cartesian_vectorized() (in module openlifu.geo) spherically_interpolated_mesh (openlifu.virtual_fit.VirtualFitDebugInfo attribute) spoke_radius (openlifu.bf.focal_patterns.wheel.Wheel attribute) standoff_density (openlifu.plan.solution_analysis.SolutionAnalysisOptions attribute) standoff_sound_speed (openlifu.plan.solution_analysis.SolutionAnalysisOptions attribute) standoff_transform (openlifu.xdc.transducer.Transducer attribute) start_monitoring() (openlifu.io.LIFUUart.LIFUUart method) start_trigger() (openlifu.io.LIFUTXDevice.TxDevice method) steering_dists (openlifu.virtual_fit.VirtualFitDebugInfo attribute) steering_limits (openlifu.virtual_fit.VirtualFitOptions attribute) stop_monitoring() (openlifu.io.LIFUUart.LIFUUart method) stop_trigger() (openlifu.io.LIFUTXDevice.TxDevice method) Subject (class in openlifu.db.subject) subject_id (openlifu.db.session.Session attribute) subprocess_stream_output() (in module openlifu.nav.photoscan) success_flag (openlifu.plan.run.Run attribute) swap_byte_order() (in module openlifu.io.LIFUTXDevice)

T

t_end (openlifu.sim.sim_setup.SimSetup attribute) tail_count (openlifu.io.LIFUTXDevice.Tx7332PulseProfile attribute) take_largest_connected_component() (in module openlifu.seg.skinseg) target (openlifu.plan.solution.Solution attribute) target_constraints (openlifu.plan.protocol.Protocol attribute) target_position_ax_mm (openlifu.plan.solution_analysis.SolutionAnalysis attribute) target_position_ele_mm (openlifu.plan.solution_analysis.SolutionAnalysis attribute) target_position_lat_mm (openlifu.plan.solution_analysis.SolutionAnalysis attribute) target_pressure (openlifu.bf.focal_patterns.focal_pattern.FocalPattern attribute) TargetConstraints (class in openlifu.plan.target_constraints) targets (openlifu.db.session.Session attribute) texture_filename (openlifu.nav.photoscan.Photoscan attribute) thermal_conductivity (openlifu.seg.material.Material attribute) TIC (openlifu.plan.solution_analysis.SolutionAnalysis attribute) to_dict() (openlifu.bf.focal_patterns.focal_pattern.FocalPattern method) (openlifu.db.session.Session method) (openlifu.nav.photoscan.Photoscan method) (openlifu.plan.run.Run method) (openlifu.plan.solution.Solution method) (openlifu.xdc.transducerarray.TransducerArray method) to_file() (openlifu.db.session.Session method) (openlifu.db.subject.Subject method) (openlifu.db.user.User method) (openlifu.nav.photoscan.Photoscan method) (openlifu.plan.protocol.Protocol method) (openlifu.plan.run.Run method) (openlifu.xdc.transducerarray.TransducerArray method) to_files() (openlifu.plan.solution.Solution method) to_json() (openlifu.db.session.Session method) (openlifu.db.user.User method) (openlifu.geo.Point method) (openlifu.nav.photoscan.Photoscan method) (openlifu.plan.protocol.Protocol method) (openlifu.plan.run.Run method) (openlifu.plan.solution.Solution method) (openlifu.plan.solution_analysis.SolutionAnalysis method) (openlifu.xdc.transducer.Transducer method) (openlifu.xdc.transducerarray.TransducerArray method) to_table() (openlifu.bf.apod_methods.apodmethod.ApodizationMethod method) (openlifu.bf.apod_methods.maxangle.MaxAngle method) (openlifu.bf.apod_methods.piecewiselinear.PiecewiseLinear method) (openlifu.bf.apod_methods.uniform.Uniform method) (openlifu.bf.delay_methods.delaymethod.DelayMethod method) (openlifu.bf.delay_methods.direct.Direct method) (openlifu.bf.focal_patterns.focal_pattern.FocalPattern method) (openlifu.bf.focal_patterns.single.SinglePoint method) (openlifu.bf.focal_patterns.wheel.Wheel method) (openlifu.bf.pulse.Pulse method) (openlifu.bf.sequence.Sequence method) (openlifu.plan.param_constraint.ParameterConstraint method) (openlifu.plan.protocol.Protocol method) (openlifu.plan.target_constraints.TargetConstraints method) (openlifu.seg.seg_method.SegmentationMethod method) (openlifu.seg.seg_methods.uniform.UniformSegmentation method) (openlifu.seg.seg_methods.uniform.UniformTissue method) (openlifu.seg.seg_methods.uniform.UniformWater method) (openlifu.sim.sim_setup.SimSetup method)

to_units() (openlifu.virtual_fit.VirtualFitOptions method) toggle_led() (openlifu.io.LIFUHVController.HVController method) (openlifu.io.LIFUTXDevice.TxDevice method) Transducer (class in openlifu.xdc.transducer) transducer (openlifu.plan.solution.Solution attribute) transducer_body_filename (openlifu.xdc.transducer.Transducer attribute) transducer_id (openlifu.db.session.Session attribute) transducer_steering_center_distance (openlifu.virtual_fit.VirtualFitOptions attribute) transducer_to_volume_tracking_approved (openlifu.db.session.TransducerTrackingResult attribute) transducer_to_volume_transform (openlifu.db.session.TransducerTrackingResult attribute) transducer_tracking_results (openlifu.db.session.Session attribute) TransducerArray (class in openlifu.xdc.transducerarray) TransducerTrackingResult (class in openlifu.db.session) TransformedTransducer (class in openlifu.xdc.transducer) turn_hv_off() (openlifu.io.LIFUHVController.HVController method) turn_hv_on() (openlifu.io.LIFUHVController.HVController method) Tx7332DelayProfile (class in openlifu.io.LIFUTXDevice) Tx7332PulseProfile (class in openlifu.io.LIFUTXDevice) Tx7332Registers (class in openlifu.io.LIFUTXDevice) TxDevice (class in openlifu.io.LIFUTXDevice) txdevice (openlifu.io.LIFUInterface attribute) TxDeviceRegisters (class in openlifu.io.LIFUTXDevice)

U

UartPacket (class in openlifu.io.LIFUUart) udim_to_tile() (in module openlifu.nav.photoscan) Uniform (class in openlifu.bf.apod_methods.uniform) UniformSegmentation (class in openlifu.seg.seg_methods.uniform) UniformTissue (class in openlifu.seg.seg_methods.uniform) UniformWater (class in openlifu.seg.seg_methods.uniform) units (openlifu.bf.apod_methods.maxangle.MaxAngle attribute) (openlifu.bf.apod_methods.piecewiselinear.PiecewiseLinear attribute) (openlifu.bf.focal_patterns.focal_pattern.FocalPattern attribute) (openlifu.geo.ArrayTransform attribute) (openlifu.geo.Point attribute) (openlifu.io.LIFUTXDevice.Tx7332DelayProfile attribute) (openlifu.plan.target_constraints.TargetConstraints attribute) (openlifu.sim.sim_setup.SimSetup attribute) (openlifu.virtual_fit.VirtualFitOptions attribute) (openlifu.xdc.element.Element attribute) (openlifu.xdc.transducer.Transducer attribute)

User (class in openlifu.db.user) util_crc16() (in module openlifu.io.LIFUUart)

V

value (openlifu.bf.apod_methods.uniform.Uniform attribute) virtual_fit_options (openlifu.plan.protocol.Protocol attribute) virtual_fit_results (openlifu.db.session.Session attribute) VirtualFitDebugInfo (class in openlifu.virtual_fit)

VirtualFitOptions (class in openlifu.virtual_fit) voltage (openlifu.plan.solution.Solution attribute) voltage_V (openlifu.plan.solution_analysis.SolutionAnalysis attribute) volume_id (openlifu.db.session.Session attribute) vtk_img_from_array_and_affine() (in module openlifu.seg.skinseg)

W

warning_value (openlifu.plan.param_constraint.ParameterConstraint attribute) Wheel (class in openlifu.bf.focal_patterns.wheel) write_block() (openlifu.io.LIFUTXDevice.TxDevice method) write_block_verify() (openlifu.io.LIFUTXDevice.TxDevice method) write_pair_file() (in module openlifu.nav.photoscan) write_photocollection() (openlifu.db.database.Database method)

write_photoscan() (openlifu.db.database.Database method) write_register() (openlifu.io.LIFUTXDevice.TxDevice method) write_register_verify() (openlifu.io.LIFUTXDevice.TxDevice method) write_run() (openlifu.db.database.Database method) write_solution_ids() (openlifu.db.database.Database method) write_ti_config_to_tx_device() (openlifu.io.LIFUTXDevice.TxDevice method) write_transducer() (openlifu.db.database.Database method)

X

x_extent (openlifu.sim.sim_setup.SimSetup attribute)

Y

y_extent (openlifu.sim.sim_setup.SimSetup attribute)

yaw_range (openlifu.virtual_fit.VirtualFitOptions attribute) yaw_step (openlifu.virtual_fit.VirtualFitOptions attribute)

Z

z_extent (openlifu.sim.sim_setup.SimSetup attribute)

zero_angle (openlifu.bf.apod_methods.piecewiselinear.PiecewiseLinear attribute)